PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G038300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 83aa    MW: 9543.14 Da    PI: 11.5921
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G038300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.61.3e-072559138
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38
                          s+y+ V+++++ grW A+I  +     +k  +lgkf  
  Sobic.007G038300.1.p 25 SKYRRVTRHHQHGRWQARIGRVAG---NKDLYLGKFSK 59
                          89****************988532...5********76 PP

Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MKHMTRQEYI AYLRRNSSGF SRGASKYRRV TRHHQHGRWQ ARIGRVAGNK DLYLGKFSKL  60
AAFFSCLFVC LENSVKPLAP IK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557321e-79EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445041.12e-36hypothetical protein SORBIDRAFT_07g003247, partial
SwissprotQ6PQQ33e-31AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLC5YGS82e-36C5YGS8_SORBI; Putative uncharacterized protein Sb07g003247 (Fragment)
STRINGSb07g003247.16e-36(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1858759
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-32AINTEGUMENTA-like 5